[sundaysebasidian-byte]

Summary

Closes #48.

CLI index and MCP index_project now load .codeprism.toml before applying explicitly supplied language and embedding arguments. Omitted arguments inherit the file; --embeddings / -e, --no-embeddings, and MCP embeddings=false provide explicit overrides. Automatic parser workers and CLI --workers are preserved.

Merged main d8d9152e3a63d1bea342af32ddd37ee06be08bac into the existing branch without rewriting history. The changelog retains both the configuration fix and #75's symbol-search entry; upstream search ranking, pagination, query-error and statistics behavior and tests are preserved. The PR still changes the original five files. No repository dependencies or workflows changed.

Validation

Cloud Linux/Python 3.12.14, using an isolated environment installed from the existing .[dev] dependencies and temporary XDG data/config directories:

• Configuration, search-pagination, CLI query/stats and MCP tests: 122 passed.
• Full suite: 841 passed, 1 existing skip; 90.07% coverage (80% required).
• Repository-wide Ruff lint/format checks and git diff --check passed.
• Advisory mypy: the same 335 existing errors as main, with no additions after mapping unchanged source lines.
• A separate Codex agent independently reviewed preservation of both parents and reran configuration/search tests: 67 passed, no blocking findings.

Current head: dcd26ea2eb0bc9d8356ff4cf3c9b5b8ee70d46d4. Its tree 5c7f8deabb8d6f48e4de915494c3d443049b9ccd matches the tested and independently reviewed tree. New-head CI and token benchmark passed for this head: Ubuntu/Python 3.12 and 3.13 full test/coverage jobs, Ruff, and the token benchmark. The CI merge tree also matches the tested tree.

Checklist

• Tests cover changed behavior with real temporary projects and SQLite.
• Ruff lint and formatting pass.
• No new mypy errors.
• Existing tests pass.
• Public docstrings, README and changelog updated.
• Conventional commits.

AI assistance: implementation, synchronization, validation and this description were prepared with Codex; a separate Codex agent performed the independent review. Optional embedding models were not downloaded or run.

[knight22-21]

Thanks for working on this! Please note that this pull request is currently marked as draft, so it cannot be reviewed or merged until it is marked as ready for review. Please convert it to ready for review when you are ready for maintainer review.

[knight22-21]

Thanks @sundaysebasidian-byte! We have merged PR #75 into \main, which introduced a merge conflict (primarily in \docs/changelog.md). Could you please update your branch / rebase onto the latest \main\ to resolve the conflict? Once updated and CI checks pass, we will be ready to review and merge this.

[knight22-21]

LGTM! Thorough implementation ensuring project configuration is consistently honored across CLI and MCP entry points, with great test coverage.

[knight22-21]

Merged, thank you @sundaysebasidian-byte! This ensures project configuration from .codeprism.toml\ is consistently applied across CLI and MCP indexers.