Skip to content
laminlabsPublic

About

Manage biological ontologies.

Resources

Contributing

Stars

27 stars

Watchers

3 watching

Forks

Repository files navigation

Stars pypi

bionty: Manage biological ontologies

  • Access >20 public ontologies (Gene, Protein, CellType, …) through a single API, served from S3 with high availability and low latency.
  • Create records from entries in public ontologies using .from_source().
  • Access full underlying public ontologies via .public() to search & bulk-create records.
  • Create in-house ontologies by extending public ontologies using hierarchical relationships among records (.parents).
  • Use .synonyms and .abbr to manage synonyms.
  • Safeguards against typos & duplications.
  • Manage multiple ontology versions via bionty.Source.

Read the docs.

About

Manage biological ontologies.

Resources

Contributing

Stars

27 stars

Watchers

3 watching

Forks

Releases

Packages

Used by

Contributors

Languages