Issues

• enhancement: unify hydrophobic patch output format

  liedllab/surface_analyses#53 · Filter by author biubiuubiuu opened on Oct 16, 2025

• Hydrophobic patch areas appear to be low by a factor of two

  liedllab/surface_analyses#50 · Filter by author DavidBJaffe opened on Mar 14, 2025
  4

• What are the units for pep_patch_electrostatic patch areas?

  liedllab/surface_analyses#44 · Filter by author DavidBJaffe opened on Feb 24, 2025
  4

• choosing VDW, SAS or SES surfaces

  liedllab/surface_analyses#43 · Filter by author johnnytam100 opened on Feb 7, 2025
  1

• Fixed patches between protein variants or conformations?

  liedllab/surface_analyses#38 · Filter by author emmeburgin opened on Jan 29, 2025
  1

• enhancement: Creating a PDB output file with all atoms that are part of patches labeled in b-factor column

  liedllab/surface_analyses#35 · Filter by author sgrannem opened on Jan 14, 2025
  17

• enhancement: check_cdr flag outcome might benefit from better default

  liedllab/surface_analyses#34 · Filter by author gieses opened on Oct 7, 2024
  2

• Cleanup

  liedllab/surface_analyses#17 · Filter by author fwaibl opened on Dec 22, 2023
  4

• pH dependence

  liedllab/surface_analyses#15 · Filter by author fwaibl opened on Dec 22, 2023