Repository navigation
fix(deps): require seqpro 0.23 and genoray 6.0.1 - #424
Merged
Merged
Conversation
genoray 6.0.1 is the first release that allows seqpro 0.23, so bump both together. genoray 6.0.0's only breaking change removes the dense find_ranges_chunk path, which GVL no longer calls. GVL's Ragged usage (fixed-axis indexing, no to_ak) is unaffected by seqpro 0.23's indexing and record to_ak() changes. Also sync the stale docs/requirements.txt pins. Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Bumps the dependency floors and ceilings for seqpro 0.23.
seqpro>=0.23(pixi pin==0.23.0)genoray>=6.0.1,<7(was>=5,<6). 6.0.1 is the first genoray release that allows seqpro 0.23 (fix(deps): allow seqpro 0.23 d-laub/genoray#222).docs/requirements.txt: synced its stale pins (seqpro>=0.3.1,genoray>=3.4.0,<5)pixi.lock: every env relocked to genoray 6.0.1 and seqpro 0.23.0Compatibility
find_ranges_chunkpath. GVL uses_find_rangesand_find_ranges_chunked_sparse, and both remain.Raggedtuple indexing along ragged axes and recordto_ak()depth (Ragged with fixed inner axis + two ragged axes: indexing and to_ak() drop the fixed axis ML4GLand/SeqPro#73, Handle missing contigs in query regions #74, Release #75). GVL only tuple-indexes a leading fixed axis (_ragged.py,starts[:, t]) and never callsto_ak().Tests (py310, macOS): pytest 1328 passed, 53 skipped, 4 xfailed; cargo test all green.
🤖 Generated with Claude Code