Issues

• Legacy POST /{job_type}/jobs accepts empty and malformed input that v1 rejects

  moleculemaker/mmli-backend#170 · Filter by author matthewberry opened on Nov 5, 2026
  1

• Record and allow recovery of changes to job buckets (MinIO versioning, audit logs, access logs)

  moleculemaker/mmli-backend#168 · Filter by author matthewberry opened on Nov 5, 2026

• Job pods: mount secret.yaml only in containers that need it

  moleculemaker/mmli-backend#167 · Filter by author matthewberry opened on Nov 5, 2026

• /v1 declares no response schemas, so generated clients type every response as any

  moleculemaker/mmli-backend#155 · Filter by author matthewberry opened on Oct 20, 2026

• Job deadline can't be set per tool: every job gets the 3-day default, including GPU jobs

  moleculemaker/mmli-backend#154 · Filter by author matthewberry opened on Oct 20, 2026

• Spike: evaluate Argo Workflows to replace hand-rolled Kubernetes job orchestration

  enhancement
  moleculemaker/mmli-backend#152 · Filter by author matthewberry opened on Oct 20, 2026

• Legacy create/upload routes overwrite an existing job's input files in MinIO

  bug
  moleculemaker/mmli-backend#150 · Filter by author matthewberry opened on Oct 19, 2026

• /v1 input 422: root error pointer is "/" instead of "" (RFC 6901)

  bug
  moleculemaker/mmli-backend#149 · Filter by author matthewberry opened on Oct 19, 2026

• /v1 schema validation: pattern uses Python re, so $ accepts a trailing newline

  bug
  moleculemaker/mmli-backend#147 · Filter by author matthewberry opened on Oct 19, 2026

• Prove /v1 submit, upload and results from a browser origin

  enhancement
  moleculemaker/mmli-backend#146 · Filter by author matthewberry opened on Oct 19, 2026
  1

• Generic notification email for tools without a branch

  enhancement
  moleculemaker/mmli-backend#145 · Filter by author matthewberry opened on Oct 19, 2026
  2

• Generic job path: schema-validated job.json in, results.json out, no per-tool code

  enhancement
  moleculemaker/mmli-backend#144 · Filter by author matthewberry opened on Oct 19, 2026
  1

• Report queued separately from processing while a job pod is Pending

  enhancement
  moleculemaker/mmli-backend#143 · Filter by author matthewberry opened on Oct 19, 2026

• Let a user subscribe to a job's notification email after submitting

  enhancement
  moleculemaker/mmli-backend#141 · Filter by author matthewberry opened on Oct 17, 2026

• Legacy GET /{job_type}/jobs lists every job, exposing user email addresses and v1 job ids

  bug
  moleculemaker/mmli-backend#140 · Filter by author matthewberry opened on Oct 17, 2026

• Legacy PUT/PATCH/DELETE job endpoints are unauthenticated; PATCH also drops the subscriber email

  bug
  moleculemaker/mmli-backend#138 · Filter by author matthewberry opened on Oct 17, 2026

• Validate job notification email addresses at submission

  bug
  moleculemaker/mmli-backend#137 · Filter by author matthewberry opened on Oct 17, 2026

• ez-specificity coordinator depends on the watcher to see sub-job completion; check the Kubernetes Job directly

  enhancement
  moleculemaker/mmli-backend#135 · Filter by author matthewberry opened on Oct 17, 2026
  1

• cleandb-mepesm and ml-simplefold accept sequence lengths neither can complete

  moleculemaker/mmli-backend#129 · Filter by author matthewberry opened on Sep 19, 2026

• kubernetes_jobs.defaults nodeSelector/tolerations are never applied — missing job config silently hangs in Pending

  bug
  moleculemaker/mmli-backend#123 · Filter by author matthewberry opened on Aug 17, 2026

• configure Matomo reporting

  moleculemaker/mmli-backend#102 · Filter by author matthewberry opened on Mar 7, 2026
  1

  

• Ensure example inputs jump immediately to precomputed outputs for all AlphaSynthesis tools

  moleculemaker/mmli-backend#93 · Filter by author matthewberry opened on Sep 24, 2025

• Check upload controls in all frontend apps for https://www.primefaces.org/cdn/api/upload.php

  moleculemaker/mmli-backend#91 · Filter by author matthewberry opened on Sep 19, 2025

• Unable to create job by calling create_job endpoint

  moleculemaker/mmli-backend#32 · Filter by author ckouder opened on Apr 4, 2024
  1

• Filter re-sorts start/middle/end block positions in tray

  bug
  moleculemaker/mmli-backend#23 · Filter by author jplaney opened on Oct 19, 2023