Skip to content
nencki-lobi
NAWA
Public

About

Multiple Sclerosis and Neuromyelitis Optica Spectrum Disorder differeciation with MRI derived biomarkers (Volumetry, DWI, QSM, R2*, R1)

Resources

Readme
Activity
Custom properties

Stars

2 stars

Watchers

1 watching

Forks

0 forks
Report repository
BranchesTags

Latest commit

 

History

71 Commits

Folders and files

NameName
Last commit message
Last commit date
DWI
DWI
 
 
Fixel
Fixel
 
 
General
General
 
 
Other
Other
 
 
Volumtery
Volumtery
 
 
cerebral_cortex
cerebral_cortex
 
 
cluster_movie
cluster_movie
 
 
lesion_identification_DL
lesion_identification_DL
 
 
lesion_informed_tractometry
lesion_informed_tractometry
 
 
white_matter
white_matter
 
 
NAWM_tracking.sh
NAWM_tracking.sh
 
 
NAWM_tractography.sh
NAWM_tractography.sh
 
 
NAWM_tracts_substitution.py
NAWM_tracts_substitution.py
 
 
NODDI_VPL.sh
NODDI_VPL.sh
 
 
Network_analysis_cortex_tracts.py
Network_analysis_cortex_tracts.py
 
 
Network_analysis_tutorial.py
Network_analysis_tutorial.py
 
 
OPLS_DA.py
OPLS_DA.py
 
 
PCA.py
PCA.py
 
 
QC.sh
QC.sh
 
 
R1_to_cifti.sh
R1_to_cifti.sh
 
 
ROC.py
ROC.py
 
 
SCT.sh
SCT.sh
 
 
SCT_analysis.sh
SCT_analysis.sh
 
 
SCT_manual_labeling.sh
SCT_manual_labeling.sh
 
 
TM_ANOVA.py
TM_ANOVA.py
 
 
Tracts_vis.py
Tracts_vis.py
 
 
Tractseg_dilation_comparison.py
Tractseg_dilation_comparison.py
 
 
UNI_denoise.sh
UNI_denoise.sh
 
 
VPL_register_extract.sh
VPL_register_extract.sh
 
 
basal_ganglia.sh
basal_ganglia.sh
 
 
bids_mp2rage.sh
bids_mp2rage.sh
 
 
bundle_load.sh
bundle_load.sh
 
 
bundle_load_plot.py
bundle_load_plot.py
 
 
calculate_FS_recon_all.sh
calculate_FS_recon_all.sh
 
 
calculate_aMWF_DTI_NODDI.sh
calculate_aMWF_DTI_NODDI.sh
 
 
ciftify.sh
ciftify.sh
 
 
convert_hcp_to_fs.sh
convert_hcp_to_fs.sh
 
 
correlations.py
correlations.py
 
 
eddy_quad.sh
eddy_quad.sh
 
 
fit_NODDI.sh
fit_NODDI.sh
 
 
lesion_dependent_test.py
lesion_dependent_test.py
 
 
lesion_filling.sh
lesion_filling.sh
 
 
lesion_probability_maps.sh
lesion_probability_maps.sh
 
 
lesion_tracking.sh
lesion_tracking.sh
 
 
lesion_tractography.sh
lesion_tractography.sh
 
 
parcellation_vis.py
parcellation_vis.py
 
 
random_sample_selector.py
random_sample_selector.py
 
 
readme
readme
 
 
renaming_ML.py
renaming_ML.py
 
 
tracseg_lesion_identification.sh
tracseg_lesion_identification.sh
 
 
tract_images.py
tract_images.py
 
 
tractseg.sh
tractseg.sh
 
 
vol2surface.sh
vol2surface.sh
 
 

Repository files navigation

Welcome to the NAWA project git hub page!

This project is about NMOSD IgG+ and MS patient classification.

In dedicated subfolders you will find detailed analysis scripts used in:
Jakuszyk P, Podlecka-Piętowska A, Kossowski B, Nojszewska M, Zakrzewska-Pniewska B, Juryńczyk M. 
Patterns of cerebral damage in multiple sclerosis and aquaporin-4 antibody-positive neuromyelitis 
optica spectrum disorders-major differences revealed by non-conventional imaging. 
Brain Commun. 2024 Aug 30;6(5):fcae295. doi: 10.1093/braincomms/fcae295. PMID: 39258257; PMCID: PMC11384145.

About

Multiple Sclerosis and Neuromyelitis Optica Spectrum Disorder differeciation with MRI derived biomarkers (Volumetry, DWI, QSM, R2*, R1)

Resources

Readme
Activity
Custom properties

Stars

2 stars

Watchers

1 watching

Forks

0 forks
Report repository

Releases

Packages

Contributors

Languages