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@ABI-Software Auckland Bioengineering Institute Software

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    96 repositories

    • scaffoldvuer

      Public
      PhysiomePortal Scaffold Viewer as a Vue Component
      Vue
      •
      Apache License 2.0
      •7•0•0•2•Updated Oct 28, 2026Oct 28, 2026

    • flatmapvuer

      Public
      Vue component of Flatmap viewer
      Vue
      •
      Apache License 2.0
      •8•0•1•7•Updated Oct 28, 2026Oct 28, 2026

    • map-utilities

      Public
      Repository for common Vue 3 components used by MAP components
      Vue
      •
      Apache License 2.0
      •4•0•0•5•Updated Oct 28, 2026Oct 28, 2026

    • mapcore-uptime-monitor

      Public
      Uptime checker for mapcore related resources
      Markdown
      •
      MIT License
      •0•0•0•0•Updated Oct 28, 2026Oct 28, 2026

    • mapintegratedvuer

      Public
      Integrated Map Vuer
      Vue
      •
      Apache License 2.0
      •13•1•4•14•Updated Oct 26, 2026Oct 26, 2026

    • simulationvuer

      Public
      Vue component for a CellML-based simulation viewer.
      Vue
      •
      Apache License 2.0
      •6•1•3•2•Updated Oct 26, 2026Oct 26, 2026

    • scaffoldmaker

      Public
      Anatomical scaffold generator using Zinc
      Python
      •
      Other
      •36•1•6•8•Updated Oct 21, 2026Oct 21, 2026

    • map-sidebar

      Public
      A side bar for user in sparc.science
      Vue
      •
      Apache License 2.0
      •9•0•0•6•Updated Oct 19, 2026Oct 19, 2026

    • mapcore-gallery

      Public
      A gallery widget for MAPcore written for Vue3
      Vue
      •
      Apache License 2.0
      •6•0•0•1•Updated Oct 19, 2026Oct 19, 2026

    • mapclientplugins.geometryfitter

      Public
      MAP Client plugin for geometric fitting of meshes using CMLibs Zinc.
      Python
      •
      Other
      •13•0•2•1•Updated Oct 13, 2026Oct 13, 2026

    • ZincJS

      Public
      JS interface to Zinc output for displaying 3D anatomical models
      JavaScript
      •
      MIT License
      •11•0•0•0•Updated Oct 12, 2026Oct 12, 2026

    • sparc-api

      Public
      SPARC Portal API
      Python
      •
      Apache License 2.0
      •15•0•0•3•Updated Oct 8, 2026Oct 8, 2026

    • plotvuer

      Public
      Process and display csv files as charts for vue. Designed specifically for use in the SPARC project
      Vue
      •
      Apache License 2.0
      •5•1•0•12•Updated Sep 30, 2026Sep 30, 2026

    • svg-sprite

      Public
      Npm package for efficiently loading svg's in vue
      JavaScript
      •5•0•0•2•Updated Sep 21, 2026Sep 21, 2026

    • exf2mbfxml

      Public
      A small Python application and library to take EXF formatted files and transform it into MBF Bioscience XML.
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Aug 17, 2026Aug 17, 2026

    • mapclientplugins.mbfxml2exconverterstep

      Public
      A MAP Client plugin for converting MBF XML to ex form.
      Python
      •
      Other
      •5•0•0•0•Updated Aug 4, 2026Aug 4, 2026

    • mapclientplugins.scaffoldcreator

      Public
      MAP Client plugin for generating meshes via scripts using OpenCMISS-Zinc.
      Python
      •
      Apache License 2.0
      •22•0•5•2•Updated Aug 4, 2026Aug 4, 2026

    • mapclientplugins.segmentationstitcherstep

      Public
      MAP-Client plugin for interactively transforming and stitching segmentation files.
      Python
      •
      Other
      •4•0•0•1•Updated Aug 4, 2026Aug 4, 2026

    • mapclientplugins.dataembedderstep

      Public
      MAP-Client plugin for embedding data in fitted scaffolds.
      Python
      •
      Apache License 2.0
      •7•0•0•0•Updated Aug 4, 2026Aug 4, 2026

    • mapclientplugins.fieldfitterstep

      Public
      MAP Client plugin for fitting fields over meshes using CMLibs Zinc.
      Python
      •
      Other
      •5•0•0•0•Updated Aug 4, 2026Aug 4, 2026

    • ssvtools

      Public
      Utilities for extracting information form SPARC Subject-Specific Vagus Scaffolds.
      Python
      •
      Other
      •2•0•0•0•Updated Jul 23, 2026Jul 23, 2026

    • 2026-aps-test-data

      Public
      Test data for 2026 aps
      Python
      •0•0•1•0•Updated Jul 21, 2026Jul 21, 2026

    • dual-licensing-example

      Public template
      An example of a software project with dual-licences
      Other
      •0•0•1•0•Updated Jul 13, 2026Jul 13, 2026

    • scicrunch-knowledge-testing

      Public
      Tests for checking the information on discover and elastic search are consistent.
      Python
      •
      Apache License 2.0
      •6•0•1•4•Updated Apr 29, 2026Apr 29, 2026

    • .github

      Public
      An Introduction to ABI-Software
      Apache License 2.0
      •0•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • sparc-app-2

      Public
      Vue
      •
      Apache License 2.0
      •11•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • get-latest-deployment-sha

      Public
      TypeScript
      •
      MIT License
      •2•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • segmentationstitcher

      Public
      Library for stitching together networks and contours segmented from multiple adjacent image blocks, including computing their relative transformations.
      Python
      •
      Apache License 2.0
      •4•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • scaffoldfitter

      Public
      A repository for fitting anatomical scaffolds to data.
      Python
      •
      Other
      •16•0•0•2•Updated Mar 9, 2026Mar 9, 2026

    • TARA-ScaffoldVuer

      Public
      TARA interface of ScaffoldVuer
      Vue
      •1•0•0•0•Updated Mar 2, 2026Mar 2, 2026
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