Repositories list

• kb_gtdbtk

  Public
  GTDB-Tk App

  Python

  •

  MIT License

  •1010 forks in kbaseapps/kb_gtdbtk•44 stars in kbaseapps/kb_gtdbtk•77 issues in kbaseapps/kb_gtdbtk•33 pull requests in kbaseapps/kb_gtdbtk•Updated Oct 27, 2026Oct 27, 2026

• fba_tools

  Public
  A suite of metabolic modeling tools created using the KBase SDK

  Perl

  •

  MIT License

  •2020 forks in kbaseapps/fba_tools•11 star in kbaseapps/fba_tools•00 issues in kbaseapps/fba_tools•00 pull requests in kbaseapps/fba_tools•Updated Oct 16, 2026Oct 16, 2026

• kb_kaiju

  Public
  Python

  •

  MIT License

  •99 forks in kbaseapps/kb_kaiju•00 stars in kbaseapps/kb_kaiju•00 issues in kbaseapps/kb_kaiju•22 pull requests in kbaseapps/kb_kaiju•Updated Oct 8, 2026Oct 8, 2026

• kb_fastqc

  Public
  Python

  •

  MIT License

  •1414 forks in kbaseapps/kb_fastqc•11 star in kbaseapps/kb_fastqc•00 issues in kbaseapps/kb_fastqc•11 pull request in kbaseapps/kb_fastqc•Updated Aug 28, 2026Aug 28, 2026

• kb_muscle

  Public
  Python

  •

  MIT License

  •33 forks in kbaseapps/kb_muscle•00 stars in kbaseapps/kb_muscle•00 issues in kbaseapps/kb_muscle•00 pull requests in kbaseapps/kb_muscle•Updated Aug 13, 2026Aug 13, 2026

• plant_fba

  Public
  GitHub repository and kb-sdk module for FBA applications involving plants

  Python

  •

  MIT License

  •11 fork in kbaseapps/plant_fba•00 stars in kbaseapps/plant_fba•00 issues in kbaseapps/plant_fba•00 pull requests in kbaseapps/plant_fba•Updated Aug 7, 2026Aug 7, 2026

• kb_orthofinder

  Public
  OrthoFinder app for annotating plant enzymes

  Python

  •

  MIT License

  •22 forks in kbaseapps/kb_orthofinder•00 stars in kbaseapps/kb_orthofinder•00 issues in kbaseapps/kb_orthofinder•11 pull request in kbaseapps/kb_orthofinder•Updated Aug 7, 2026Aug 7, 2026

• kb_DRAM

  Public
  A Kbase app for DRAM

  Python

  •

  MIT License

  •44 forks in kbaseapps/kb_DRAM•11 star in kbaseapps/kb_DRAM•00 issues in kbaseapps/kb_DRAM•00 pull requests in kbaseapps/kb_DRAM•Updated Aug 6, 2026Aug 6, 2026

• kb_Canu

  Public
  Python

  •

  MIT License

  •11 fork in kbaseapps/kb_Canu•00 stars in kbaseapps/kb_Canu•00 issues in kbaseapps/kb_Canu•00 pull requests in kbaseapps/kb_Canu•Updated Jun 23, 2026Jun 23, 2026

• kb_Raven

  Public
  new raven repo

  Python

  •

  MIT License

  •11 fork in kbaseapps/kb_Raven•00 stars in kbaseapps/kb_Raven•00 issues in kbaseapps/kb_Raven•00 pull requests in kbaseapps/kb_Raven•Updated Jun 23, 2026Jun 23, 2026

• kb_flye

  Public
  Python

  •

  MIT License

  •00 forks in kbaseapps/kb_flye•00 stars in kbaseapps/kb_flye•00 issues in kbaseapps/kb_flye•00 pull requests in kbaseapps/kb_flye•Updated May 12, 2026May 12, 2026

• KBDatalakeDashboard

  Public
  Dashboard for visualizing data in the Genome Datatables object

  Python

  •11 fork in kbaseapps/KBDatalakeDashboard•00 stars in kbaseapps/KBDatalakeDashboard•00 issues in kbaseapps/KBDatalakeDashboard•00 pull requests in kbaseapps/KBDatalakeDashboard•Updated May 8, 2026May 8, 2026

• KBDatalakeApps

  Public
  Apps designed for generating insights into user data in KBase using KBase Datalake

  Python

  •

  MIT License

  •33 forks in kbaseapps/KBDatalakeApps•00 stars in kbaseapps/KBDatalakeApps•11 issue in kbaseapps/KBDatalakeApps•00 pull requests in kbaseapps/KBDatalakeApps•Updated May 6, 2026May 6, 2026

• sample_uploader

  Public
  Python

  •

  MIT License

  •77 forks in kbaseapps/sample_uploader•00 stars in kbaseapps/sample_uploader•00 issues in kbaseapps/sample_uploader•44 pull requests in kbaseapps/sample_uploader•Updated Apr 13, 2026Apr 13, 2026

• kb_nanofilt

  Public
  Python

  •

  MIT License

  •11 fork in kbaseapps/kb_nanofilt•00 stars in kbaseapps/kb_nanofilt•00 issues in kbaseapps/kb_nanofilt•00 pull requests in kbaseapps/kb_nanofilt•Updated Mar 17, 2026Mar 17, 2026

• sketch_service

  Public
  Service that returns similar genomes from a given assembly/genome ID

  Python

  •

  MIT License

  •33 forks in kbaseapps/sketch_service•00 stars in kbaseapps/sketch_service•00 issues in kbaseapps/sketch_service•1818 pull requests in kbaseapps/sketch_service•Updated Mar 1, 2026Mar 1, 2026

• RAST_SDK

  Public
  Perl

  •

  MIT License

  •1818 forks in kbaseapps/RAST_SDK•11 star in kbaseapps/RAST_SDK•11 issue in kbaseapps/RAST_SDK•33 pull requests in kbaseapps/RAST_SDK•Updated Feb 13, 2026Feb 13, 2026

• kb_djornl

  Public
  A KBase module wrapper and visualization for RWR tools which use the random walk with restart method on multiplex coexpression networks representing genes (node…

  Python

  •

  MIT License

  •55 forks in kbaseapps/kb_djornl•44 stars in kbaseapps/kb_djornl•00 issues in kbaseapps/kb_djornl•00 pull requests in kbaseapps/kb_djornl•Updated Jan 7, 2026Jan 7, 2026

• kb_nanoplot

  Public
  Python

  •

  MIT License

  •11 fork in kbaseapps/kb_nanoplot•00 stars in kbaseapps/kb_nanoplot•00 issues in kbaseapps/kb_nanoplot•00 pull requests in kbaseapps/kb_nanoplot•Updated Dec 16, 2025Dec 16, 2025

• KBAnnotationApps

  Public
  Python

  •

  MIT License

  •11 fork in kbaseapps/KBAnnotationApps•00 stars in kbaseapps/KBAnnotationApps•00 issues in kbaseapps/KBAnnotationApps•00 pull requests in kbaseapps/KBAnnotationApps•Updated Nov 5, 2025Nov 5, 2025

• kb_bedtools

  Public
  Python

  •

  MIT License

  •11 fork in kbaseapps/kb_bedtools•00 stars in kbaseapps/kb_bedtools•00 issues in kbaseapps/kb_bedtools•11 pull request in kbaseapps/kb_bedtools•Updated Oct 21, 2025Oct 21, 2025

• kb_phylogenomics

  Public
  Python

  •

  MIT License

  •66 forks in kbaseapps/kb_phylogenomics•22 stars in kbaseapps/kb_phylogenomics•22 issues in kbaseapps/kb_phylogenomics•00 pull requests in kbaseapps/kb_phylogenomics•Updated Oct 21, 2025Oct 21, 2025

• GenericsUtil

  Public
  Utilities to import and map KBase Generic objects.

  Java

  •

  MIT License

  •11 fork in kbaseapps/GenericsUtil•00 stars in kbaseapps/GenericsUtil•00 issues in kbaseapps/GenericsUtil•00 pull requests in kbaseapps/GenericsUtil•Updated Oct 14, 2025Oct 14, 2025

• kb_quast

  Public
  KBase wrapper for the QUAST assembly quality assessment tool.

  Python

  •

  MIT License

  •99 forks in kbaseapps/kb_quast•00 stars in kbaseapps/kb_quast•00 issues in kbaseapps/kb_quast•22 pull requests in kbaseapps/kb_quast•Updated Oct 8, 2025Oct 8, 2025

• GenomeFileUtil

  Public
  Python

  •

  MIT License

  •1414 forks in kbaseapps/GenomeFileUtil•00 stars in kbaseapps/GenomeFileUtil•33 issues in kbaseapps/GenomeFileUtil•22 pull requests in kbaseapps/GenomeFileUtil•Updated Sep 22, 2025Sep 22, 2025

• kb_Msuite

  Public
  Python

  •

  MIT License

  •1111 forks in kbaseapps/kb_Msuite•11 star in kbaseapps/kb_Msuite•11 issue in kbaseapps/kb_Msuite•11 pull request in kbaseapps/kb_Msuite•Updated Sep 9, 2025Sep 9, 2025

• kb_MaSuRCA

  Public
  This KBase app wraps the genome assembly software MaSuRCA(Maryland Super-Read Celera Assembler)

  Python

  •

  MIT License

  •33 forks in kbaseapps/kb_MaSuRCA•22 stars in kbaseapps/kb_MaSuRCA•00 issues in kbaseapps/kb_MaSuRCA•00 pull requests in kbaseapps/kb_MaSuRCA•Updated Sep 2, 2025Sep 2, 2025

• kb_cutadapt

  Public
  KBase wrapper for the cutadapt tool

  Python

  •

  MIT License

  •55 forks in kbaseapps/kb_cutadapt•11 star in kbaseapps/kb_cutadapt•00 issues in kbaseapps/kb_cutadapt•00 pull requests in kbaseapps/kb_cutadapt•Updated Sep 2, 2025Sep 2, 2025

• kb_stringtie

  Public
  Module for running the StringTie application (http://ccb.jhu.edu/software/stringtie/index.shtml)

  Python

  •

  MIT License

  •1010 forks in kbaseapps/kb_stringtie•22 stars in kbaseapps/kb_stringtie•11 issue in kbaseapps/kb_stringtie•44 pull requests in kbaseapps/kb_stringtie•Updated Sep 2, 2025Sep 2, 2025

• kb_SPAdes

  Public
  SPAdes wrapper

  Python

  •

  MIT License

  •1616 forks in kbaseapps/kb_SPAdes•00 stars in kbaseapps/kb_SPAdes•11 issue in kbaseapps/kb_SPAdes•33 pull requests in kbaseapps/kb_SPAdes•Updated Jul 28, 2025Jul 28, 2025