UCLA JCCC - Cancer Data Science

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30 packages

pipeval
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/package-PipeVal

105k
bwa-mem2
Published Jul 12, 2023 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-BWA-MEM2

72k
call-gsnp
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science

59.2k
samtools
Published Sep 16, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-SAMtools

56.4k
picard
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-Picard

23.6k
cicd-base
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science

19.9k
bcftools
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-BCFtools

10.1k
somaticsniper
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-SomaticSniper

8.13k
mopepgen
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/package-moPepGen

7.47k
boutroslabplottinggeneral
Published Sep 26, 2023 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-BoutrosLabPlottingGeneral

6.78k
manta
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-Manta

6.67k
delly
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-Delly

6.41k
gatk
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science

6.01k
muse
Published Aug 31, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-MuSE

5.07k
bamql
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science

4.9k
mtoolbox
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science

3.99k
rtg-tools
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-RTGtools

3.83k
vcftools
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-VCFtools

3.68k
mitocaller
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science

3.18k
mitocaller2vcf
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science

3.18k
bwa-mem2_samtools-1.12
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-BWA-MEM2

2.97k
bam-readcount
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-bam-readcount

2.88k
strelka2
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-Strelka2

2.84k
cnv_facets
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-cnv_facets

2.76k
battenberg
Published Jun 27, 2023 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-Battenberg

2.68k
call-ssnv-r
Published Jul 3, 2023 by UCLA JCCC - Cancer Data Science

2.67k
bedtools
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science in uclahs-cds/docker-BEDtools

2.42k
call-heteroplasmy-script
Published Sep 20, 2022 by UCLA JCCC - Cancer Data Science

1.24k
stablelift
Published Jul 8, 2024 by UCLA JCCC - Cancer Data Science in uclahs-cds/pipeline-StableLift

968
plantuml-github-action
Published Feb 3, 2023 by UCLA JCCC - Cancer Data Science

496