Issues

• Different fault: The RMblast engine is not installed in RepeatMasker!

  oushujun/EDTA#654 · Filter by author GaoHao111 opened on Nov 3, 2026

• LTR_retriever salvage shifts SCN columns and loses superfamily labels on EDTA overwrite rerun

  oushujun/EDTA#652 · Filter by author rimjhimroy opened on Oct 23, 2026

• Get FASTA sequences from CNN prediction from TIR research crashes with an error

  oushujun/EDTA#651 · Filter by author Mathieuzz opened on Oct 20, 2026

• Parallel Genome Annotation Using a panEDTA Library

  oushujun/EDTA#650 · Filter by author zhengluo-zz opened on Oct 11, 2026

• Can panEDTA v2.30 reuse output files generated by v2.20

  oushujun/EDTA#649 · Filter by author Axolotl233 opened on Sep 29, 2026

• LTR candidates: "Error: Could not load sequence. Empty file or bad format."

  oushujun/EDTA#643 · Filter by author tecornell2 opened on Aug 22, 2026

• .EDTA.TElib.LTRbound not generated with --wholeelement 1

  oushujun/EDTA#642 · Filter by author piwczyn opened on Aug 9, 2026

• EDTA v2.3.1 : --type flag not recognized

  oushujun/EDTA#639 · Filter by author Mtsrn0 opened on Jul 12, 2026

• TIR-Learner model cannot be loaded using current BioContainers Docker images (EDTA 2.2.0, 2.2.2 and 2.3.0)

  oushujun/EDTA#638 · Filter by author am4ndaPC opened on Jul 9, 2026
  1

• Question about repeated 'Aborted' messages during EDTA homology-based annotation

  oushujun/EDTA#637 · Filter by author piwczyn opened on Jul 8, 2026

• EDTA_v2.3_Compatibility_Troubleshooting and Solutions

  oushujun/EDTA#636 · Filter by author haoran-chn opened on Jul 3, 2026
  1

• Inconsistent Test Program Output Between Apptainer and Conda Installations

  oushujun/EDTA#634 · Filter by author Mtsrn0 opened on Jun 26, 2026

• TIR-Learner step crashes with KeyError: 0 due to Pandas 2.0+ incompatibility

  oushujun/EDTA#631 · Filter by author lorenzopenone opened on May 22, 2026
  2

• EDTA stopped after finding no SINEs

  oushujun/EDTA#625 · Filter by author beibeiliu1008 opened on Mar 4, 2026
  6

• Illegal division by zero in find_flTE.pl during panEDTA run

  oushujun/EDTA#624 · Filter by author AnaKurdadze opened on Mar 2, 2026

• LINE and TIR detection failed while running EDTA on a tapeworm genome (1.20Gb), but the pipeline finished

  TIR-Learner
  oushujun/EDTA#619 · Filter by author hliu45749-ops opened on Feb 4, 2026
  3

• Question about divergence estimation for structurally annotated TIR elements in EDTA

  TIR-Learner
  oushujun/EDTA#618 · Filter by author C-YONG opened on Feb 4, 2026
  1

• the bug of singularity use the edta container，

  oushujun/EDTA#617 · Filter by author Jiangjiangzhang6 opened on Feb 4, 2026
  1

• HelitronScanner not detected when running EDTA, but works for another user with the same script

  enhancement
  oushujun/EDTA#615 · Filter by author juliagries opened on Jan 21, 2026
  4

• result error form panEDTA

  oushujun/EDTA#603 · Filter by author Xoey0314 opened on Sep 26, 2025
  4

• Input file "jaw.final.genome.fasta.mod.EDTA.TElib.fa.masked" not found! Resulting in the failure of LTR recognition

  oushujun/EDTA#588 · Filter by author GUS616123 opened on Jul 7, 2025
  3

• Time consumption about EDTA

  TIR-Learner
  oushujun/EDTA#580 · Filter by author star-lamp opened on Jun 22, 2025
  2

• Suggestion on “CDS” symbolic link logic in panEDTA.sh

  enhancement
  oushujun/EDTA#578 · Filter by author mushroomOK opened on Jun 19, 2025
  3

• EDTA crashing after not finding any SINE candidates

  question
  oushujun/EDTA#565 · Filter by author cohen-r opened on Apr 30, 2025
  9

• Warning: LOC list - is empty / NO LTRs, SINES or LINES

  oushujun/EDTA#550 · Filter by author keith-harrison opened on Mar 5, 2025
  6