Issues

• Error 11 in running generate_introns.py

  pachterlab/kma#28 · Filter by author edwardfu11 opened on Jan 6, 2023

• kma-kallisto

  pachterlab/kma#27 · Filter by author KevDonn opened on May 16, 2022

• About what kma can do?

  pachterlab/kma#25 · Filter by author zhengjiantao opened on Dec 26, 2018
  1

• Error in generate_introns.py.

  pachterlab/kma#23 · Filter by author zhengjiantao opened on Dec 22, 2018
  2

• --extend

  pachterlab/kma#22 · Filter by author zhengjiantao opened on Dec 21, 2018

• Does kma support kallisto?

  pachterlab/kma#21 · Filter by author MySelvan opened on Dec 13, 2018

• numerator && denominator

  pachterlab/kma#20 · Filter by author BGIHENG opened on Nov 14, 2018
  1

• Error in "newIntronRetention"

  pachterlab/kma#19 · Filter by author adamtongji opened on Sep 11, 2018
  6

• Installation failed

  pachterlab/kma#18 · Filter by author immuneAI opened on May 10, 2018
  1

• error in hypothesis testing step in kea

  pachterlab/kma#17 · Filter by author gupta567varun opened on Jan 9, 2018
  2

• Error 'KeyError:3'

  pachterlab/kma#16 · Filter by author lynnyi opened on Dec 15, 2017
  2

• Question about --extend parameter

  pachterlab/kma#15 · Filter by author lynnyi opened on Dec 15, 2017
  1

• can quantification by kallisto being supported?

  pachterlab/kma#14 · Filter by author trptyrphe11 opened on Jun 26, 2017
  4

• inner_join in newIntronRetention

  pachterlab/kma#11 · Filter by author aldojongejan opened on Feb 14, 2017

• Output of a new GTF file with IR events?

  pachterlab/kma#10 · Filter by author jamespblloyd opened on Dec 16, 2016

• error "object 'pvalue' not found" when using all_zc() R function

  pachterlab/kma#9 · Filter by author rhugh-white opened on Nov 2, 2016

• generate_introns.py different number of introns in introns.bed and intron_to_transcripts.txt

  pachterlab/kma#8 · Filter by author fgypas opened on Apr 29, 2016

• Pre-processing with generate_introns.py failing

  pachterlab/kma#7 · Filter by author skasowitz opened on Apr 5, 2016
  7

• eXpress runs out of memory

  pachterlab/kma#6 · Filter by author julsssen opened on Apr 5, 2016
  2

• couldn't see vignette after installation

  pachterlab/kma#5 · Filter by author mambastats opened on Dec 13, 2015
  1

• Problem in R: computing dominator

  pachterlab/kma#4 · Filter by author LiLey opened on Dec 4, 2015
  2

• HISAT2 - cufflinks

  pachterlab/kma#3 · Filter by author vmanders opened on Nov 16, 2015
  4

• Install error on linux

  pachterlab/kma#2 · Filter by author DrHale opened on May 13, 2015
  2