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@pughlab

Pugh Lab

The Pugh Laboratory at the Princess Margaret Cancer Centre

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  1. PughLabReadme PughLabReadme Public

    Documentation of best practices, coding tips, and ongoing projects developed by the Pugh Lab.

    1

  2. cbioportal cbioportal Public

    Forked from cBioPortal/cbioportal

    cBioPortal for Cancer Genomics

    Java 2

  3. ConsensusCruncher ConsensusCruncher Public

    ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a cons…

    Jupyter Notebook 20 9

  4. VisCap VisCap Public

    VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data.…

    R 22 11

  5. crescent crescent Public

    The CanceR Single Cell ExpressioN Toolkit one-line-command applications.

    R 9 4

  6. pipeline-suite pipeline-suite Public

    Collection of pipelines for NGS analysis along with utilities

    Perl 4 3

Repositories

Showing 10 of 128 repositories
  • tigerdb-v2 Public
    pughlab/tigerdb-v2's past year of commit activity
    TypeScript 0 AGPL-3.0 0 0 0 Updated Nov 3, 2026
  • ctims-assembler Public

    CTIMS Assembler for integrating with clinical data sources

    pughlab/ctims-assembler's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 27, 2026
  • ctims-trial-ctmls Public

    CTIMS public CTML files

    pughlab/ctims-trial-ctmls's past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Oct 10, 2026
  • ctims-pages Public

    CTIMS Github Pages

    pughlab/ctims-pages's past year of commit activity
    0 0 0 0 Updated Oct 8, 2026
  • COMBAT Public
    pughlab/COMBAT's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 7, 2026
  • cfWGS-MM-MRD Public Forked from DoryAbelman/cfWGS-MM-MRD

    This directory contains scripts for "Cell-free DNA Whole Genome Sequencing for Non-Invasive MRD Detection in Multiple Myeloma" by Abelman et al., 2025

    pughlab/cfWGS-MM-MRD's past year of commit activity
    R 0 MIT 1 0 0 Updated Sep 30, 2026
  • cfdna-myeloma-multiomics Public

    Analysis and manuscript code for a targeted panel and shallow WGS study of peripheral blood and bone marrow cell-free DNA in multiple myeloma. Includes pipelines for feature processing (mutations, translocations, CNAs, BCR, fragmentomics), integration across cohorts, longitudinal tracking, and modeling of MRD/progression.

    pughlab/cfdna-myeloma-multiomics's past year of commit activity
    R 0 0 0 0 Updated Sep 30, 2026
  • cbioportal-frontend Public Forked from cBioPortal/cbioportal-frontend

    React Frontend of cBioPortal 🎉

    pughlab/cbioportal-frontend's past year of commit activity
    TypeScript 1 AGPL-3.0 449 0 0 Updated Sep 25, 2026
  • tigerdb Public

    TIGERdb: T-Cell and ImmunoGlobulin Epitope Receptor DataBase

    pughlab/tigerdb's past year of commit activity
    TypeScript 1 AGPL-3.0 0 0 3 Updated Sep 25, 2026
  • mixcr_QC Public
    pughlab/mixcr_QC's past year of commit activity
    Python 0 1 0 0 Updated Sep 23, 2026
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