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CWL input objects don't need to define $namespaces or $schemas if the workflow already defines those. #2

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CWL input objects don't need to define $namespaces or $schemas if the workflow already defines those. #2

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6 changes: 0 additions & 6 deletions inputs/extract_regions.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -6,9 +6,3 @@ region_file:
class: File
format: iana:text/plain
path: /home/pvh/Documents/code/Masters/protein_evidence_mapping/data/proteins1.txt

$namespaces:
edam: http://edamontology.org/
iana: https://www.iana.org/assignments/media-types/
$schemas:
- http://edamontology.org/EDAM_1.18.owl
5 changes: 0 additions & 5 deletions inputs/metaeuk_inputs.yml
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Expand Up @@ -9,8 +9,3 @@ query:
output_name: test.fasta
max_intron: 1000000
min_coverage: 0.01

$namespaces:
edam: http://edamontology.org/
$schemas:
- http://edamontology.org/EDAM_1.18.owl
5 changes: 0 additions & 5 deletions inputs/metaeuk_to_regions_inputs.yml
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Expand Up @@ -2,8 +2,3 @@ metaeuk_fasta:
class: File
path: /home/pvh/Documents/code/Masters/protein_evidence_mapping/data/metaeuk_out.fasta
format: edam:format_1929

$namespaces:
edam: http://edamontology.org/
$schemas:
- http://edamontology.org/EDAM_1.18.owl
5 changes: 0 additions & 5 deletions inputs/queue_workflow_inputs.yml
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Expand Up @@ -7,8 +7,3 @@ proteins_fasta:
format: edam:format_1929
path: /usr/people/pvh/seabass/RefSeq_proteins__Cynoglossus_semilaevis.fasta
species_table: cynosemi

$namespaces:
edam: http://edamontology.org/
$schemas:
- http://edamontology.org/EDAM_1.18.owl
5 changes: 0 additions & 5 deletions inputs/spaln_input.yml
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Expand Up @@ -8,8 +8,3 @@ query_fasta:
path: /home/pvh/Documents/code/Masters/protein_evidence_mapping/data/protein1.fasta
species: cynosemi
output_format: 0

$namespaces:
edam: http://edamontology.org/
$schemas:
- http://edamontology.org/EDAM_1.18.owl
5 changes: 0 additions & 5 deletions inputs/workflow1_inputs.yml
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Expand Up @@ -11,8 +11,3 @@ metaeuk_output:
format: edam:format_1929
path: /home/pvh/Documents/code/Masters/protein_evidence_mapping/data/metaeuk_out.fasta
species_table: cynosemi

$namespaces:
edam: http://edamontology.org/
$schemas:
- http://edamontology.org/EDAM_1.18.owl