Issues

• Vignette example data Dropbox is empty (muo_data.rds unavailable)

  quadbio/Pando#81 · Filter by author rxzhu1123 opened on Sep 15, 2026

• Dependency grr no longer building + removed from CRAN

  quadbio/Pando#80 · Filter by author halhen opened on May 1, 2026

• Fitting model failed for all gene in infer_grn for muo_data.rds

  quadbio/Pando#79 · Filter by author jiangpuxuan opened on Aug 25, 2025

• Error in infer_grn()

  quadbio/Pando#78 · Filter by author kryptonitecircuit2002 opened on Aug 7, 2025

• Inquiry about calculating and comparing TF activity in different cell population

  quadbio/Pando#77 · Filter by author Kyung-TaeLee opened on Jun 19, 2025
  1

• Error in get_network_graph(object)

  quadbio/Pando#76 · Filter by author SharonKartika opened on Jun 9, 2025

• NA p-values in NetworkModules output

  quadbio/Pando#75 · Filter by author umutcakir opened on May 27, 2025

• Older version for Seurat V4

  quadbio/Pando#72 · Filter by author 1226235 opened on Feb 20, 2025

• Error in initiate_grn()

  quadbio/Pando#70 · Filter by author madeleineagerholm opened on Jan 12, 2025
  1

• Error in .width_as_unnamed_integer

  quadbio/Pando#69 · Filter by author ChangliangWang opened on Nov 21, 2024

• Question: peak to gene custom annotation

  quadbio/Pando#67 · Filter by author JABioinf opened on Oct 21, 2024

• Gene dropout from modules and errors for alternative infer_grn methods

  quadbio/Pando#66 · Filter by author simpakkk opened on Jul 29, 2024
  1

• model overfitting

  quadbio/Pando#64 · Filter by author tkisss opened on Apr 30, 2024

• Pando output - enhancer regions

  quadbio/Pando#63 · Filter by author valentinaOpazo opened on Apr 22, 2024

• regions parameter in initate_grn()

  quadbio/Pando#62 · Filter by author sylestiel opened on Apr 14, 2024
  4

• Question on grn output: how to interpret the grn output where there are list of TFs and their target genes?

  quadbio/Pando#59 · Filter by author yojetsharma opened on Mar 9, 2024
  1

• Error in as_igraph_vs(graph, from) : Invalid vertex names while running plot_tf_network

  quadbio/Pando#58 · Filter by author yojetsharma opened on Mar 9, 2024
  1

• plot_network_graph() only plot target genes

  quadbio/Pando#56 · Filter by author zhenzuo2 opened on Jan 29, 2024
  1

• Error in find_motifs with invalid version slot in SeuratPlus object

  quadbio/Pando#53 · Filter by author jsacco1 opened on Dec 26, 2023
  5

• Advice about a dataset with conditions

  quadbio/Pando#52 · Filter by author AmelZulji opened on Dec 12, 2023
  4

• Error with findOverlaps function while initiating grn

  quadbio/Pando#51 · Filter by author niklasbinder opened on Nov 29, 2023

• infer_grn errors

  quadbio/Pando#50 · Filter by author bjstewart1 opened on Nov 16, 2023

• input data normalisation

  quadbio/Pando#48 · Filter by author bjstewart1 opened on Oct 25, 2023
  7

• Error:infer_grn(),

  quadbio/Pando#42 · Filter by author wxpbioinfo opened on Jun 24, 2023
  5

• ERROR in GRN inference

  quadbio/Pando#36 · Filter by author Usamahussein551980 opened on Mar 1, 2023
  2