Issues

• Resolved: hhsuitedb.py UTF-8 decode crash + _cs219 misses from long/complex names

  soedinglab/hh-suite#388 · Filter by author Jiachen2000 opened on Dec 29, 2025

• HHsuite databases

  soedinglab/hh-suite#387 · Filter by author Darius-Kazlauskas opened on Dec 12, 2025
  2

• hhsuitedb nf-core module

  soedinglab/hh-suite#386 · Filter by author vagkaratzas opened on Jun 19, 2025

• Search database against itself

  soedinglab/hh-suite#385 · Filter by author Xillanne opened on May 22, 2025

• Build custom database with HMMS directly

  soedinglab/hh-suite#384 · Filter by author saimanzano opened on May 14, 2025

• Can't find old version of pdb70_from_mmcif

  soedinglab/hh-suite#383 · Filter by author gouhaoran opened on Apr 29, 2025

• Databases link not found

  soedinglab/hh-suite#382 · Filter by author jchen634 opened on Mar 12, 2025
  4

• HHblits run stuck at the prefiltering stage

  soedinglab/hh-suite#381 · Filter by author rayab1993 opened on Jan 29, 2025

• 15:01:57.162 ERROR: could not open file uniclust30_2016_09_cs219.ffdata'

  soedinglab/hh-suite#380 · Filter by author minhphi1712 opened on Jan 23, 2025

• I can't convert cif to fasta file

  soedinglab/hh-suite#379 · Filter by author minhphi1712 opened on Jan 14, 2025

• running time problem

  soedinglab/hh-suite#378 · Filter by author unknow1024 opened on Dec 9, 2024

• Segmentation Fault with HHblits

  soedinglab/hh-suite#377 · Filter by author TejaNimmKU opened on Nov 27, 2024

• Issue with make & install

  soedinglab/hh-suite#376 · Filter by author SihuiZhu0927 opened on Oct 22, 2024
  1

• addss.pl calls blastpgp and makemat which are legacy blast commands

  soedinglab/hh-suite#374 · Filter by author Beigephage opened on May 24, 2024
  3

• PDB70 errors

  soedinglab/hh-suite#373 · Filter by author bregman3 opened on May 9, 2024

• HHblits failed : Unrecognized HMM file format in '468479486'

  soedinglab/hh-suite#372 · Filter by author Madhumitha0206 opened on Apr 1, 2024

• Segmentation Fault Running HHsearch

  soedinglab/hh-suite#371 · Filter by author darylrbarth opened on Mar 27, 2024

• Pfam36 Update

  soedinglab/hh-suite#370 · Filter by author LicoriceLin opened on Mar 6, 2024
  5

• Using hh-suites to find E.coli gene in other Proteobacteria <advice on the way I am using the method>

  soedinglab/hh-suite#369 · Filter by author Jigyasa3 opened on Feb 20, 2024

• 您好 制作属于自己的蛋白质数据集时出了问题

  soedinglab/hh-suite#368 · Filter by author zj223332 opened on Feb 14, 2024

• Python 3.11 Support

  soedinglab/hh-suite#367 · Filter by author shreyasvinaya opened on Feb 9, 2024
  1

• Segmentation fault with ffindex_apply -- hhmake

  soedinglab/hh-suite#366 · Filter by author jolienvanhooff opened on Jan 30, 2024

• HHblits Prefiltering database run time on Supercomputer Cluster

  soedinglab/hh-suite#365 · Filter by author Harryyang21 opened on Jan 7, 2024
  3

• PackagesNotFoundError

  soedinglab/hh-suite#364 · Filter by author BluCp opened on Dec 12, 2023
  3

• Both HHBlits and HHSearch give misaligned indels for homologous sequences

  soedinglab/hh-suite#363 · Filter by author hrp1000 opened on Dec 7, 2023