Issues

• how to defined the color myself in paga node ?

  theislab/paga#33 · Filter by author honghh2018 opened on Nov 5, 2024

• Replacement of / Alternative to the ForceAtlas2 package

  theislab/paga#32 · Filter by author jasonleongbio opened on Jul 21, 2024

• Questions about adding category annotation in pl.paga_path

  theislab/paga#31 · Filter by author Yansr3 opened on May 2, 2024

• Legend loc for PAGA

  theislab/paga#30 · Filter by author flde opened on Nov 10, 2022

• Questions related PAGA directions analysis arrows.

  theislab/paga#29 · Filter by author mayurdoke6 opened on Sep 22, 2022

• Overlay paga-trajectory result on umap

  theislab/paga#28 · Filter by author parkjooyoung99 opened on May 11, 2022
  1

• Index of data output from sc.pl.paga_path

  theislab/paga#27 · Filter by author sevlandais opened on Apr 19, 2022

• Paga results in tabular form

  theislab/paga#26 · Filter by author julie-jch opened on Feb 9, 2022

• The paga

  theislab/paga#25 · Filter by author yuanzhiyuan opened on Nov 22, 2021
  1

• Failure to load dahlin18 data

  theislab/paga#24 · Filter by author sgmccalla opened on Jun 23, 2021

• Specify root based on specific genes

  theislab/paga#23 · Filter by author GabyBG opened on Mar 14, 2021

• Faithfulness of PAGA embedding

  theislab/paga#22 · Filter by author EliseAld opened on Feb 1, 2021

• About caculation of PAGA connectivity score

  theislab/paga#21 · Filter by author hahia opened on Jan 28, 2021

• _get_connectivities_tree_v1_0

  theislab/paga#18 · Filter by author masato-tsutsui opened on Jun 5, 2020

• sc.utils.merge_groups does not exist

  theislab/paga#17 · Filter by author davidfstein opened on Jun 4, 2020

• genes with different dynamics across branches + Pie charts in nodes of PAGA graphs

  theislab/paga#15 · Filter by author massonix opened on Jan 24, 2020

• About the knn graph

  theislab/paga#13 · Filter by author xuebaliang opened on Jul 14, 2019

• Write network file

  theislab/paga#12 · Filter by author sgmccalla opened on Jun 27, 2019

• RNA velocity and fig3 in the Genome Bio paper

  theislab/paga#11 · Filter by author DHGK opened on Jun 16, 2019
  4

• ERROR: Axes instance argument was not found in a figure

  theislab/paga#10 · Filter by author Pikachu233 opened on Jun 12, 2019

• No /write/pos.csv file as input for blood/nestorowa16

  theislab/paga#6 · Filter by author Bio-designer opened on Mar 28, 2019
  1

• 1M_neurons link in README.md goes to logfile_1.3M.txt

  theislab/paga#5 · Filter by author fbnrst opened on Feb 27, 2019

• zebrafish example bug

  theislab/paga#2 · Filter by author AltynaiA opened on Jan 24, 2019
  14