✨🧬 Refined binning of metagenomic contigs using assembly graphs
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Mar 6, 2025 - Python
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assembly-graph
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This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
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Apr 22, 2021 - Python
🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit
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Jun 25, 2026 - Python
Visualize genome sequence assemblies
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Mar 11, 2026 - Java
Plastr — a plaster for your assembly. Bandage-style graph visualisation, QUAST-style QC, and reference-guided scaffolding you can export. Validated against both on real bacterial genomes.
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Aug 3, 2026 - Python
Graph-based metagenomic binning and context-aware scaffolding workflow for improving microbial genome reconstruction from short-read assemblies.
machine-learning bioinformatics metagenomics binning microbiome assembly-graph genome-scaffolding metagenome-assembly genome-reconstruction
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Jun 23, 2026 - Python
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