oral-microbiome

Here are 6 public repositories matching this topic...

Frederick-abichahine / Dental-Plaque-Metagenomic-Analysis

Analyzing the genomic and metagenomic features of SGB748 MAGs from oral samples to uncover their role in health and peri-implant diseases through patient metadata integration.

shell bash bioinformatics microbial-genomics metagenomic-analysis phylogenetic-analysis roary prokka genomic-analysis checkm oral-microbiome metadata-integration dental-plaque peri-implantitis sgb-mags phylophlan fast-tree

Updated Jul 13, 2025
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TeresaLobo / oral-resistome-metagenomics

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Oral metagenomic analysis of antimicrobial resistance genes associated with periodontitis

bioinformatics metagenomics microbiome resistome antimicrobial-resistance rstars oral-microbiome periodontitis

Updated Sep 25, 2026
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Praveen26-09 / parkinsons-oral-gut-brain-axis

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Multi-omics characterization of the oral-gut-brain axis in Parkinson's disease using shotgun metagenomics, microbial biomarker discovery, and machine learning.

machine-learning bioinformatics nextflow metagenomics xgboost network-analysis parkinsons-disease microbiome-analysis wgs-data gut-microbiome kraken2 bracken shotgun-metagenomics humann3 oral-microbiome biomarker-prediction microbial-biomarker oral-gut-brainaxis

Updated Jul 18, 2026
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biocoms / ta_systems_oral_mt

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Analysis of toxin-antitoxin systems in healthy, caries and treated oral metatranscriptomes

computational-biology metatranscriptomics dental-caries mobile-genetic-elements toxin-antitoxin oral-microbiome

Updated Aug 7, 2025
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danilp786 / Alzheimer-AInterpretable

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Análisis exploratorio del microbioma oral en la enfermedad de Alzheimer mediante bioinformática, aprendizaje automático e IA explicable. Incluye un pipeline reproducible en QIIME 2, análisis de ASVs, taxonomía SILVA, SHAP y modelos basados en Transformers.

machine-learning bioinformatics transformers microbiome alzheimers-disease explainable-ai qiime2 shap oral-microbiome