plant-science

tutorials made for biologists to learn deep learning

Materials of the course WBIO-A-08 Plant Bioinformatics

Python package for Genome-Wide Association Studies (GWAS). Implements GLM, MLM, FarmCPU, and BLINK with support for VCF, PLINK, HapMap, and CSV genotype formats.

CropForge is an open-source, code-first virtual farm runtime that enables agricultural researchers to define, execute, and visually analyse crop simulations entirely from Python code. It is distributed as a pip-installable package and runs completely on the researcher's local machine.

SPIRO is a Smart Plate Imaging Robot

Tools and Statistical Procedures in Plant Science

Packages for graphics and index for seed germination ecophysiological evaluation

Codex skill for Chinese scientific manuscript humanizing, terminology protection, and evidence-strength review.

An R package to investigate the RNA mobilome & population-scale changes.

collection of functional annotation methods in plant genomics

Complete tissue culture & hydroponics toolkit — beginner walkthrough, 10 SOPs, sterilization calculator, media formulations, growth regulators, EC/pH tools. Zero deps.

A multi-species Agent Skill for reproducible downstream plant proteomics analysis with dynamic species resolution and database routing.

Beginner-first, peer-reviewed cannabis cultivation white papers — 33 self-contained interactive HTML guides on propagation, crop steering, environment, plant health, precision irrigation and GMP.

Plant science stomatal outreach game project

Condition-aware, evidence-traceable retrieval and abstention baseline for maize C4 photosynthesis

Personal academic portfolio & research blog — Postdoctoral Scholar at UC Davis | Plant Science, Multi-Omics, Grapevine Virology

Open-source resource on electroculture and electroagriculture based on Justin Christofleau's patents (1920s). Includes scientific studies, translated patents with modern diagrams, step-by-step guides, and educational materials for sustainable agriculture using atmospheric electricity.

GPML to RDF for plant Wikipathways

A Jupyter Docker Stack for Plant Scientists and Breeders

The Breeder Genomics Hub is a batteries-included JupyterHub distribution for breeders (Pangeo for plant scientists)