Issues

• bamtools Installation error

  zeeev/wham#70 · Filter by author thugib opened on Dec 5, 2025

• how to locate the source of this error for"bam had 14838 reads that were not processed"

  zeeev/wham#69 · Filter by author celesteimnskirakira opened on May 10, 2025

• whamg on HPC

  zeeev/wham#68 · Filter by author RafigaM opened on May 2, 2025

• WHAMG call more DUPs in several samples compared to other software

  zeeev/wham#67 · Filter by author Linaria219 opened on Apr 1, 2025
  2

• WHAMG analysis runs with Illumina DRAGEN 3.7.6 cram output producing empty VCF files

  zeeev/wham#66 · Filter by author Solyris83 opened on Jan 7, 2025
  1

• long time on "INFO: Gathering graphs from forest." before getting the run killed.

  zeeev/wham#65 · Filter by author chuddy-ibk opened on Dec 11, 2024

• HG002 results suspiciously bad

  zeeev/wham#64 · Filter by author jdidion opened on Jul 25, 2024
  5

• [Question] Is Linux ARM64 supported ?

  zeeev/wham#60 · Filter by author gancho-ivanov opened on Jul 18, 2022
  4

• Meaning of AT Parameters?

  zeeev/wham#59 · Filter by author GWheelerEB opened on Sep 7, 2021

• Output vcf file: ALT is not sequence

  zeeev/wham#58 · Filter by author quentin0515 opened on Mar 9, 2021
  1

• Wham installation fails

  zeeev/wham#56 · Filter by author cccnrc opened on Sep 1, 2020
  3

• error: INFO: processed 0 reads for BAM file

  zeeev/wham#55 · Filter by author cccnrc opened on Sep 1, 2020
  6

• installation fails

  zeeev/wham#54 · Filter by author masen1991 opened on Jan 11, 2020
  1

• Workflow for large number of genomes (Population)

  question
  zeeev/wham#52 · Filter by author djakubosky opened on Sep 26, 2019
  4

• Stochastic output

  question
  zeeev/wham#51 · Filter by author mwalker174 opened on Sep 24, 2019
  1

• classify_WHAM_vcf.py issue

  zeeev/wham#50 · Filter by author JuanmaMedina opened on Aug 6, 2019
  2

• installation fails undefined reference to BamTools functions

  zeeev/wham#49 · Filter by author wiraki opened on Aug 16, 2018
  8

• Empty output file

  zeeev/wham#48 · Filter by author Addicted-to-coding opened on Aug 1, 2018
  5

• whamg trouble - finishing instantly with no results

  bug
  zeeev/wham#38 · Filter by author afkoeppel opened on Jun 15, 2016
  8

• translocation test cases

  enhancement
  zeeev/wham#31 · Filter by author zeeev opened on Apr 13, 2016
  10

• Ability to add flat files for options and skip complex regions.

  enhancement
  zeeev/wham#18 · Filter by author srynobio opened on Oct 15, 2015