Issues

• TRF re-aligns a long tandem array at every position past about 40 kb

  Benson-Genomics-Lab/TRF#37 · Filter by author rmhubley opened on Oct 2, 2026

• Parameter suggestion for finding telomeric sequences

  Benson-Genomics-Lab/TRF#35 · Filter by author desmodus1984 opened on Sep 15, 2025

• Build and Test for Linux/Arm64

  Benson-Genomics-Lab/TRF#34 · Filter by author odidev opened on Jul 23, 2025

• TRF on the scanning stage when kicked for chr1

  Benson-Genomics-Lab/TRF#33 · Filter by author ds-gene104 opened on Jul 15, 2025

• Version mismatch in build with github tag

  Benson-Genomics-Lab/TRF#32 · Filter by author rohan-ibn-tariq opened on Jun 16, 2025

• sh: line 1: <number> Aborted for paths longer than 260 characters

  Benson-Genomics-Lab/TRF#31 · Filter by author nikostr opened on Jun 12, 2025

• version 4.10.0 trf

  Benson-Genomics-Lab/TRF#30 · Filter by author JHCCoder opened on Jun 11, 2025

• Fastq mode?

  Benson-Genomics-Lab/TRF#29 · Filter by author plattsad opened on Mar 7, 2025

• Install from Bioconda fail on M-series Macs

  Benson-Genomics-Lab/TRF#28 · Filter by author Adamtaranto opened on Oct 28, 2024
  1

• Average time of running TRF

  Benson-Genomics-Lab/TRF#26 · Filter by author jawad9-11 opened on Sep 26, 2024

• The TRF(Tandem Repeats Finder, Version 4.09) runs for an excessively long time without any results.

  Benson-Genomics-Lab/TRF#25 · Filter by author yukaiquan opened on Sep 1, 2024
  9

• Output machine-readable alignment

  Benson-Genomics-Lab/TRF#24 · Filter by author wiedenhoeft opened on Apr 23, 2024

• large genome bug

  Benson-Genomics-Lab/TRF#23 · Filter by author zskey-zn opened on Apr 1, 2024
  2

• 运行trf 总是在运行一段时间后退出且查看nohup.out发现没有报错。

  Benson-Genomics-Lab/TRF#22 · Filter by author Blosers opened on Mar 21, 2024
  5

• The difference between trf409.legacylinux64 and trf409.linux64

  Benson-Genomics-Lab/TRF#21 · Filter by author wpf95 opened on Dec 21, 2023

• sequence size

  Benson-Genomics-Lab/TRF#20 · Filter by author huangl07 opened on Aug 2, 2023

• Running in multiple fasta files

  Benson-Genomics-Lab/TRF#19 · Filter by author schlogl2017 opened on Jun 10, 2023

• Non-executable TRF

  Benson-Genomics-Lab/TRF#18 · Filter by author rnbehm opened on May 30, 2023
  4

• Add length of sequence input to .dat file?

  Benson-Genomics-Lab/TRF#17 · Filter by author tomsauv opened on Jan 17, 2023

• Issue about tandem repeat GAA in FXN gene missed by TRF.

  Benson-Genomics-Lab/TRF#16 · Filter by author fjmuzengyiheng opened on Nov 29, 2022

• output length of tandem repeats

  Benson-Genomics-Lab/TRF#14 · Filter by author jorondo1 opened on Aug 2, 2022
  4

• TRF v4.10.0 on miniconda

  Benson-Genomics-Lab/TRF#13 · Filter by author MaestSi opened on Jun 26, 2022
  6

• trf2bed

  Benson-Genomics-Lab/TRF#12 · Filter by author jaudall opened on Jun 22, 2022
  2

• longer tandem repeat identification

  Benson-Genomics-Lab/TRF#11 · Filter by author jbelyeu opened on Apr 14, 2022
  1

• Context dependence of calls for short repeats

  Benson-Genomics-Lab/TRF#10 · Filter by author plavskin opened on Dec 16, 2021