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Move uniprot/uniref pipelines to uniprot_cdm/uniref_cdm namespace - #292

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ialarmedalien merged 3 commits into
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uniprot_uniref_to_cdm
Oct 21, 2026
Merged

ialarmedalien merged 3 commits into
developfrom
uniprot_uniref_to_cdm

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separate out uniprot/uniref importers to have cdm suffix

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codecov Bot commented Oct 21, 2026 •

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Codecov Report

❌ Patch coverage is 0% with 2 lines in your changes missing coverage. Please review.
✅ Project coverage is 80.01%. Comparing base (a88e6ad) to head (86a0d1b).
⚠️ Report is 1 commits behind head on develop.
✅ All tests successful. No failed tests found.

Files with missing lines Patch % Lines
src/cdm_data_loaders/pipelines/uniprot_kb_cdm.py 0.00% 1 Missing ⚠️
src/cdm_data_loaders/pipelines/uniref_cdm.py 0.00% 1 Missing ⚠️

❗ There is a different number of reports uploaded between BASE (a88e6ad) and HEAD (86a0d1b). Click for more details.

HEAD has 1 upload less than BASE
Flag BASE (a88e6ad) HEAD (86a0d1b)
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Additional details and impacted files

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@@             Coverage Diff              @@
##           develop     #292       +/-   ##
============================================
- Coverage    96.72%   80.01%   -16.71%     
============================================
  Files           91       90        -1     
  Lines         8884     6565     -2319     
============================================
- Hits          8593     5253     -3340     
- Misses         291     1312     +1021     
Files with missing lines Coverage Δ
src/cdm_data_loaders/parsers/uniprot/uniprot_kb.py 100.00% <ø> (ø)
src/cdm_data_loaders/pipelines/uniprot_kb_cdm.py 0.00% <0.00%> (ø)
src/cdm_data_loaders/pipelines/uniref_cdm.py 0.00% <0.00%> (ø)

... and 19 files with indirect coverage changes


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@ialarmedalien
ialarmedalien merged commit 43ba45f into develop Oct 21, 2026
16 of 23 checks passed
@ialarmedalien
ialarmedalien deleted the uniprot_uniref_to_cdm branch October 21, 2026 19:49
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