Skip to content

v0.1.12: new uniprot / uniref XML pipelines - #294

Merged
ialarmedalien merged 3 commits into
developfrom
uniprot_uniref_pipelines
Oct 22, 2026
Merged

ialarmedalien merged 3 commits into
developfrom
uniprot_uniref_pipelines

update uv lock

a6744e0
Select commit
Loading
Failed to load commit list.
Codecov / codecov/project failed Oct 22, 2026 in 1s

80.58% (-0.21%) compared to 80a500e

View this Pull Request on Codecov

80.58% (-0.21%) compared to 80a500e

Details

Codecov Report

❌ Patch coverage is 53.70370% with 25 lines in your changes missing coverage. Please review.
✅ Project coverage is 80.58%. Comparing base (80a500e) to head (a6744e0).
⚠️ Report is 1 commits behind head on develop.
✅ All tests successful. No failed tests found.

Files with missing lines Patch % Lines
...cdm_data_loaders/pipelines/xmltopyarrow/uniprot.py 0.00% 11 Missing ⚠️
.../cdm_data_loaders/pipelines/xmltopyarrow/uniref.py 0.00% 11 Missing ⚠️
...dm_data_loaders/pipelines/xmltopyarrow/settings.py 93.10% 2 Missing ⚠️
...dm_data_loaders/pipelines/xmltopyarrow/pipeline.py 0.00% 1 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@             Coverage Diff             @@
##           develop     #294      +/-   ##
===========================================
- Coverage    80.78%   80.58%   -0.21%     
===========================================
  Files           92       96       +4     
  Lines         7093     7148      +55     
===========================================
+ Hits          5730     5760      +30     
- Misses        1363     1388      +25     
Files with missing lines Coverage Δ
src/cdm_data_loaders/schemas/uniprot/schema.py 100.00% <ø> (ø)
src/cdm_data_loaders/schemas/uniref/schema.py 100.00% <100.00%> (ø)
...dm_data_loaders/pipelines/xmltopyarrow/pipeline.py 0.00% <0.00%> (ø)
...dm_data_loaders/pipelines/xmltopyarrow/settings.py 91.80% <93.10%> (+0.89%) ⬆️
...cdm_data_loaders/pipelines/xmltopyarrow/uniprot.py 0.00% <0.00%> (ø)
.../cdm_data_loaders/pipelines/xmltopyarrow/uniref.py 0.00% <0.00%> (ø)

Continue to review full report in Codecov by Harness.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update 5977261...a6744e0. Read the comment docs.