Dev -> main - #273
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…) (#266) cellxgene-census now returns an AnnData whose .layers exposes a None key, which repr_dict surfaced as 'layers': [None] and broke the structural comparison in test_cellxgene_adata. repr_dict now ignores None keys, so the comparison stays on meaningful (named) elements and is robust to this upstream drift. Adds a network-free TestReprDict test that guards the behavior on every Python version (the live Census tests skip where cellxgene-census has no wheel). Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
…#261) * feat(utils): retry transient errors in rest_query/post_query Ensembl REST and other upstream services occasionally return transient 5xx (500/502/503/504) or 429 responses, or drop the connection under load. Every Ensembl-backed module (seq, ref, search, info, blat, and enrichr with ensembl=True) routes through rest_query/post_query, so a single transient blip currently fails the whole call. Add a small _query_with_retry helper and route both functions through it: - Retries on 429/5xx and on connection/timeout errors, with linear backoff (2s, 4s, 6s). - Honors a Retry-After header when the server sends one (capped at 30s). - Does NOT retry 4xx client errors (e.g. 404) — those are returned to the caller unchanged, preserving existing error handling. - After exhausting retries, returns the last response (or re-raises the last connection error) so callers behave exactly as before. Add offline unit tests (TestQueryRetry) covering success-after-retry, connection-error retry, no-retry on 404, retry exhaustion, and Retry-After handling. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test: report the 25 slowest tests via pytest --durations Add `--durations=25` to pytest addopts so every CI run prints the slowest tests at the end of the log. This makes it easy to spot which (mostly network-bound) tests dominate CI wall-clock time, complementing the request-retry changes in this PR. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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