A Snakemake pipeline for microbial genome reconstruction and annotation using a catalogue of shotgun metagenomic data from Alzheimer’s disease mouse models. The original dataset pertaining to 3xTg-AD mice was published and detailed in Favero et al., Biol Direct, 2024 (PMID: 39478626).
shotgun metagenomics alzheimers-disease protein-annotation genome-reconstruction 3xtg-ad mouse-modules
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Aug 10, 2026 - Python