JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
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Jul 16, 2026 - JavaScript
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protein-annotation
Here are 22 public repositories matching this topic...
ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model (Connecting text and protein)
protein-function-prediction protein-annotation protein-alignment contrastive-learning protein-language-model sequence-structure protein-clip protein-text protein-text-search protein-natural-language-search protein-text-retrieval protein-text-alignment text-protein-search
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May 15, 2026 - Python
A software package for computing features of peptides and proteins
bioinformatics machine-learning-algorithms protein-annotation amino-acid-composition function-annotation pssm-profile
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May 8, 2026 - Python
Exploring Evolution-aware & free protein language models as protein function predictors
benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding
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Sep 28, 2024 - Python
A package to annotate protein sequences
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Feb 23, 2025 - Python
[ICLR 2026] Lost in Tokenization: Context as the Key to Unlocking Biomolecular Understanding in Scientific LLMs
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Nov 25, 2025 - Python
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their variant of interest in the context of general population-based genetic variation, and provides detailed information on pathogenic variants found across homologous protein domain positions, for GRCh37 and GRCh38.
bioinformatics genetics proteins genes pathogenicity clinvar variant-annotations variant-analysis bioinformatics-databases protein-domains pfam pathogenic-variants acmg protein-annotation genetic-tolerance domain-homology variant-interpretation gnomad missense clinical-genetics
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Oct 23, 2026 - Python
Tool for similarity analysis of protein function annotations.
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Mar 2, 2022 - Python
🧬 SeqStudio: Generative reasoning system for protein functional annotation
bioinformatics uniprot protein-function-prediction protein-annotation protein-function large-language-model
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Apr 21, 2026 - Python
An ensemble method for predicting proteins secreted via exosomes
bioinformatics machine-learning-algorithms protein-annotation subcellular-location-prediction exosomal-proteins
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May 8, 2026 - Python
Novel method for specific metal-binding sites prediction with known 3D structure.
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Jan 22, 2021 - Python
an assortment of bioinformatics inspired Python scripts
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Apr 15, 2017 - Python
Standalone Python package for annotating protein sequences with biological and physicochemical properties (iFeature, IEDB, SignalP) for reverse vaccinology. Extracted from VacSol-ML(ESKAPE); supports multi-allele MHC-I/II epitope prediction. Provides both a Python API and a CLI
machine-learning bioinformatics machine-learning-algorithms proteomics signal-peptides bioinformatics-analysis python-package epitope-prediction-methods protein-annotation bioinformatics-tool epitope-prediction vaccine-design reverse-vaccinology mhc-binding-prediction protein-annotations proteomics-data-analysis signal-peptide iedb ifeature signal-peptide-detection
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Jul 30, 2026 - Python
React webapp to submit and retrieve jobs from Deciphon – a protein prediction tool for nanopore reads
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Nov 11, 2024 - JavaScript
Defensive evaluation of protein sequence-annotation consistency across five Claude versions, with reproducible benign trials and an evaluation card.
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Jul 12, 2026 - Python
MCP server for accessing InterPro data
bioinformatics protein-domains ai-agents sequence-analysis protein-annotation interpro llm-tools model-context-protocol mcp-server
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Aug 20, 2026 - Java
A Snakemake pipeline for microbial genome reconstruction and annotation using a catalogue of shotgun metagenomic data from Alzheimer’s disease mouse models. The original dataset pertaining to 3xTg-AD mice was published and detailed in Favero et al., Biol Direct, 2024 (PMID: 39478626).
shotgun metagenomics alzheimers-disease protein-annotation genome-reconstruction 3xtg-ad mouse-modules
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Aug 10, 2026 - Python
人体微生物功能挖掘 dsh 插件：把目标酶/EC/底物-产物反应转化为候选蛋白、序列/结构/FedKEA/文献证据链与可验证实验方案。内置 9 个 skill 和 25 个脚本，支持 DIAMOND/CD-HIT/US-align/DEER/FedKEA/Bakta/SignalP 外部工具接入，结构优先排序。
bioinformatics metagenomics microbiome structure-prediction human-microbiome sequence-analysis protein-annotation enzyme-discovery deepseek-harness dsh-plugin literature-evidence function-mining
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Oct 12, 2026 - Python
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