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Develop => main for v0.1.12 - #295

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ialarmedalien merged 21 commits into
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develop
Oct 22, 2026
Merged

ialarmedalien merged 21 commits into
mainfrom
develop

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codecov Bot commented Oct 22, 2026 •

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Codecov Report

❌ Patch coverage is 85.99398% with 93 lines in your changes missing coverage. Please review.
✅ Project coverage is 80.58%. Comparing base (2ec93fb) to head (e35a843).
⚠️ Report is 1 commits behind head on main.
✅ All tests successful. No failed tests found.

Files with missing lines Patch % Lines
src/cdm_data_loaders/readers/xsd.py 93.29% 34 Missing ⚠️
...dm_data_loaders/pipelines/xmltopyarrow/pipeline.py 0.00% 23 Missing ⚠️
...cdm_data_loaders/pipelines/xmltopyarrow/uniprot.py 0.00% 11 Missing ⚠️
.../cdm_data_loaders/pipelines/xmltopyarrow/uniref.py 0.00% 11 Missing ⚠️
src/cdm_data_loaders/pipelines/ncbi_ftp_promote.py 0.00% 5 Missing ⚠️
...dm_data_loaders/pipelines/xmltopyarrow/settings.py 91.80% 5 Missing ⚠️
...c/cdm_data_loaders/pipelines/xmltodict/pipeline.py 0.00% 2 Missing ⚠️
src/cdm_data_loaders/pipelines/uniprot_kb_cdm.py 0.00% 1 Missing ⚠️
src/cdm_data_loaders/pipelines/uniref_cdm.py 0.00% 1 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##             main     #295      +/-   ##
==========================================
+ Coverage   80.04%   80.58%   +0.53%     
==========================================
  Files          90       96       +6     
  Lines        6560     7148     +588     
==========================================
+ Hits         5251     5760     +509     
- Misses       1309     1388      +79     
Files with missing lines Coverage Δ
src/cdm_data_loaders/parsers/uniprot/uniprot_kb.py 100.00% <ø> (ø)
...c/cdm_data_loaders/pipelines/jsonlines/settings.py 90.62% <100.00%> (ø)
...rc/cdm_data_loaders/pipelines/ncbi_ftp_download.py 44.84% <100.00%> (+1.02%) ⬆️
...c/cdm_data_loaders/pipelines/xmltodict/settings.py 100.00% <100.00%> (+8.10%) ⬆️
...rs/readers/jsonschema_xsv/xsv_validator/helpers.py 100.00% <ø> (ø)
src/cdm_data_loaders/readers/xml.py 96.26% <100.00%> (+1.26%) ⬆️
src/cdm_data_loaders/schemas/uniprot/schema.py 100.00% <ø> (ø)
src/cdm_data_loaders/schemas/uniref/schema.py 100.00% <100.00%> (ø)
src/cdm_data_loaders/pipelines/uniprot_kb_cdm.py 0.00% <0.00%> (ø)
src/cdm_data_loaders/pipelines/uniref_cdm.py 0.00% <0.00%> (ø)
... and 7 more

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@ialarmedalien
ialarmedalien merged commit 6be6ad2 into main Oct 22, 2026
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