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kbase
cdm-data-loaders
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Develop => main for v0.1.12
- #295
#295
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ialarmedalien
merged 21 commits into
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Oct 22, 2026
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Develop => main for v0.1.12
#295
ialarmedalien
merged 21 commits into
main
kbase/cdm-data-loaders:main
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develop
kbase/cdm-data-loaders:develop
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Commits on Oct 20, 2026
Preliminary test framework creation
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Unify JSONL, dest table reading; create generic CtsSettings builder; add shared FileItemDict and duckdb helpers
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Consolidate fixtures and remove duplicated functions
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remove make_file_item dupes and manual duckdb pipeline boilerplate; remove duped duckdb helpers; standardize helpers
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consolidate entry canonicalisation and variation helps
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Rebase on develop, incorporate report format changes
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Merge pull request #291 from kbase/workflow_run_tests
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Commits on Oct 21, 2026
Move uniprot/uniref pipelines to uniprot_cdm/uniref_cdm namespace
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update framework to include renamed modules
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Add in docker tests
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Merge pull request #292 from kbase/uniprot_uniref_to_cdm
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New xsd/pyarrow XML data loader
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ruff format
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ruff format, rm unused loggers
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add in missing resources
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Merge pull request #293 from kbase/xmltopyarrow
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Separating uniprot and uniref pipelines out; adding schemas. Refactoring some tests
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formatting
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update uv lock
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Commits on Oct 22, 2026
Merge pull request #294 from kbase/uniprot_uniref_pipelines
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Merge branch 'main' into develop
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